Use the Sequence Length field to search by length and the Organism field to search by organism name.īecause map location is written as free text and can be represented in a number of ways (e.g., chromosome number, cytogenetic location, marker name, physical map location), it is not directly searchable in the Entrez Nucleotide or Protein databases. Can also include other information such as map location, strain, clone, tissue type, etc., if provided by submitter.Įntrez Search Field: All Fields can be used to search for some elements in the source field, such as strain, clone, tissue type. Mandatory feature in each record that summarizes the length of the sequence, scientific name of the source organism, and Taxon ID number. For example, you can limit your search to records that contain both primer_bind and promoter features. You can then select one or more features from the index to include in your query. Search Tip: To scroll through the list of available features, view the Feature Key field in Index mode.
The Other Features section, below, provides links to some GenBank records that show a variety of additional features. The sample record shown here only includes a small number of features (source, CDS, and gene, all of which are described below). JOURNAL Submitted (2) Terry Roemer, Biology, Yale University, NewĬDS " symbol follows a base span, the sequence is partial on the 3' end (e.g., CDS 435.915>).įor more information about feature locations, see the Sequin Help Documentation and section 3.4.12.2 of the GenBank release notes. TITLE Selection of axial growth sites in yeast requires Axl2p, a novel TITLE Cloning and sequence of REV7, a gene whose function is required forĭNA damage-induced mutagenesis in Saccharomyces cerevisiaeĪUTHORS Roemer,T., Madden,K., Chang,J. Saccharomycetales Saccharomycetaceae Saccharomyces.ĪUTHORS Torpey,L.E., Gibbs,P.E., Nelson,J.
SOURCE Saccharomyces cerevisiae (baker's yeast)Įukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes (AXL2) and Rev7p (REV7) genes, complete cds. LOCUS SCU49845 5028 bp DNA PLN 2 DEFINITION Saccharomyces cerevisiae TCP1-beta gene, partial cds, and Axl2p You can also return to the Alphabetical Quicklinks Table or Resource Guide All of the descriptions are included on this page, so it can be printed as a single document. More information on the samples analysed in this work can be found in the IGSR portal.įrequency distributions and genotypes are available in Ensembl.Click on any link in this sample record to see a detailed description of that data element or field. Including the alignment files used in the variant identification and the call set itself The files generated in this analysis can be accessed from our FTP. Compared to our previous work with the 1000 Genomes Project data on GRCh38 described here, we identified over nine million novel SNVs and over 870 thousand novel INDELs. Variation had not previously been explored on the GRCh38 human genome assembly for 387 of the samples. We have recently published a Data Note describing our analysis of 505 samples from four Gambian populations in the Gambian Genome Variation Project (GGVP) on GRCh38.įor the analysis we have used a multi-caller site discovery approach along with imputation and phasing to produce a phased biallelic single nucleotide variant (SNV) and insertion/deletion (INDEL) call set. Latest Announcements Thursday September 30, 2021Ī variation call set obtained from the analysis of Gambian Genome Variation Project samples on GRCh38
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